i3Drefine: a software for reliable and computationally efficient protein structure refinement. PDF

MULTICOM: a protein tertiary structure predictor using multi-template combination. PDF

DoBo: a protein domain boundary predictor by integrating evolutionary signals and machine learning. PDF

PSpro 1.1: a suite of protems to predict protein 1D and 2D structure featuers (secondary structure, solvent accessibility, contact map). PDF

APOLLO: assessing protein single or multiple model(s). (Evaluating the absolute and/or relative qualities of multiple models or a single model.) PDF

NNRank and NNClass 1.1: Neural networks for ordinal regression and classification. PDF

SVMcon 1.0: Protein contact map prediction using support vector machines. Ranked among the best methods in CASP7,8,9 (e.g. no. 1 automated method in CASP9). PDF

NNcon 1.0: Protein contact map prediction using neural networks. Ranked among the best methods in CASP7, 8 and 9 (e.g. no. 1 automated method in CASP8) PDF

HMMEditor 1.0: A visual editor for profile hidden Markov model. PDF

SeqRate 1.0: Prediction of protein folding rate. PDF

PreDisorder 1.1: Protein disordered region prediction. Ranked among the best methods in CASP7, 8 and 9 (e.g. no. 2 automated method in CASP9). PDF

MSACompro 1.2.0: MSACompro is a novel and practical multiple protein sequence alignment algorithm based on secondary structure, solvent accessibility, and contact map information. This is an updated version of MSACompro 1.1.0. PDF

MSACompro 1.1.0: an updated version of MSACompro 1.0.1. PDF

MSACompro 1.0.1: a novel and practical multiple protein sequence alignment algorithm based on secondary structure, solvent accessibility, and contact map information. PDF

FAQ (Frequently Asked Questions) PDF